Transcriptome sequencing and marker development in winged bean (Psophocarpus tetragonolobus; Leguminosae)
نویسندگان
چکیده
Winged bean, Psophocarpus tetragonolobus (L.) DC., is similar to soybean in yield and nutritional value but more viable in tropical conditions. Here, we strengthen genetic resources for this orphan crop by producing a de novo transcriptome assembly and annotation of two Sri Lankan accessions (denoted herein as CPP34 [PI 491423] and CPP37 [PI 639033]), developing simple sequence repeat (SSR) markers, and identifying single nucleotide polymorphisms (SNPs) between geographically separated genotypes. A combined assembly based on 804,757 reads from two accessions produced 16,115 contigs with an N50 of 889 bp, over 90% of which has significant sequence similarity to other legumes. Combining contigs with singletons produced 97,241 transcripts. We identified 12,956 SSRs, including 2,594 repeats for which primers were designed and 5,190 high-confidence SNPs between Sri Lankan and Nigerian genotypes. The transcriptomic data sets generated here provide new resources for gene discovery and marker development in this orphan crop, and will be vital for future plant breeding efforts. We also analyzed the soybean trypsin inhibitor (STI) gene family, important plant defense genes, in the context of related legumes and found evidence for radiation of the Kunitz trypsin inhibitor (KTI) gene family within winged bean.
منابع مشابه
Transcriptome sequencing and marker development in winged bean ( Psophocarpus 1 tetragonolobus ; Leguminosae )
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Characterization of winged bean (Psophocarpus tetragonolobus (L.) DC.) based on molecular, chemical and physiological parameters
Winged bean (Psophocarpus tetragonolobus (L.) DC.) is a potential legume crop of the tropics with high protein and oil content in the seeds. Analysis of the mutual genotypic relationships among twenty four genotypes of P. tetragonolobus through Mantel test found a significant correlation (r = 0.839) between similarity matrices of the results obtained from the use of the RAPD and ISSR molecular ...
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The major seed albumin from Psophocarpus tetragonolobus (L.) DC, winged bean albumin 1, has been crystallized from ethanol as rhombic needles in a form suitable for high resolution x-ray crystallographic studies. The space group is I4(1)22 with cell parameters a = b = 95.6 A, and c = 86.0 A. Amino acid sequence homology between winged bean albumin 1 and legume 7 S globulins suggests that the fo...
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عنوان ژورنال:
دوره 6 شماره
صفحات -
تاریخ انتشار 2016